J4_8ZH3_011
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8ZH3|1|S2|A|1026, 8ZH3|1|S2|C|1028, 8ZH3|1|S2|U|1029, 8ZH3|1|S2|A|1030, 8ZH3|1|S2|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZH3|1|S2|A|622
8ZH3|1|S2|A|623
8ZH3|1|S2|G|624
*
8ZH3|1|S2|C|975
8ZH3|1|S2|G|976
8ZH3|1|S2|A|977
8ZH3|1|S2|A|978
8ZH3|1|S2|A|979
8ZH3|1|S2|G|980
*
8ZH3|1|S2|C|1021
8ZH3|1|S2|C|1022
8ZH3|1|S2|A|1023
8ZH3|1|S2|U|1024
8ZH3|1|S2|A|1025
8ZH3|1|S2|A|1026
8ZH3|1|S2|A|1027
8ZH3|1|S2|C|1028
8ZH3|1|S2|U|1029
8ZH3|1|S2|A|1030
8ZH3|1|S2|U|1031
8ZH3|1|S2|G|1032
*
8ZH3|1|S2|U|1103
8ZH3|1|S2|U|1104
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lp
- Large ribosomal subunit protein eL41A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain SZ
- Small ribosomal subunit protein uS11B
- Chain Sb
- Small ribosomal subunit protein uS8A
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Se
- Small ribosomal subunit protein eS26B
Coloring options: