J4_8ZHB_001
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 8ZHB|1|LA|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZHB_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1449
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8ZHB|1|LA|U|112
8ZHB|1|LA|C|113
*
8ZHB|1|LA|G|267
8ZHB|1|LA|A|268
8ZHB|1|LA|G|269
8ZHB|1|LA|U|270
8ZHB|1|LA|C|271
8ZHB|1|LA|G|272
*
8ZHB|1|LA|C|293
8ZHB|1|LA|U|294
8ZHB|1|LA|A|295
8ZHB|1|LA|A|296
8ZHB|1|LA|G|297
8ZHB|1|LA|U|298
8ZHB|1|LA|G|299
*
8ZHB|1|LA|U|316
8ZHB|1|LA|A|317
8ZHB|1|LA|A|318
8ZHB|1|LA|A|319
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Lj
- Large ribosomal subunit protein uL29A
- Chain Lk
- Large ribosomal subunit protein eL36A
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