J4_8ZHC_001

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UC*GAGUCG*CUAAGUG*UAAA

Length

19 nucleotides

Bulged bases

8ZHC|1|LA|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZHC_001 not in the Motif Atlas

Homologous match to J4_8P9A_012

Geometric discrepancy: 0.1246

The information below is about J4_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8ZHC|1|LA|U|112
8ZHC|1|LA|C|113
*
8ZHC|1|LA|G|267
8ZHC|1|LA|A|268
8ZHC|1|LA|G|269
8ZHC|1|LA|U|270
8ZHC|1|LA|C|271
8ZHC|1|LA|G|272
*
8ZHC|1|LA|C|293
8ZHC|1|LA|U|294
8ZHC|1|LA|A|295
8ZHC|1|LA|A|296
8ZHC|1|LA|G|297
8ZHC|1|LA|U|298
8ZHC|1|LA|G|299
*
8ZHC|1|LA|U|316
8ZHC|1|LA|A|317
8ZHC|1|LA|A|318
8ZHC|1|LA|A|319

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LN

Large ribosomal subunit protein eL13A

Chain LP

Large ribosomal subunit protein eL15A

Chain Lj

Large ribosomal subunit protein uL29A

Chain Lk

Large ribosomal subunit protein eL36A