J4_8ZHC_012
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8ZHC|1|Ta|U|8, 8ZHC|1|Ta|U|48, 8ZHC|1|Ta|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZHC_012 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.2045
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
8ZHC|1|Ta|G|7
8ZHC|1|Ta|U|8
8ZHC|1|Ta|G|9
8ZHC|1|Ta|G|10
*
8ZHC|1|Ta|C|26
8ZHC|1|Ta|G|27
8ZHC|1|Ta|U|28
*
8ZHC|1|Ta|A|44
8ZHC|1|Ta|A|45
8ZHC|1|Ta|G|46
8ZHC|1|Ta|G|47
8ZHC|1|Ta|U|48
8ZHC|1|Ta|C|49
8ZHC|1|Ta|G|50
*
8ZHC|1|Ta|C|66
8ZHC|1|Ta|C|67
Current chains
- Chain Ta
- tRNA (77-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LM
- Large ribosomal subunit protein uL5B
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SK
- Small ribosomal subunit protein eS25A
- Chain eR
- Eukaryotic peptide chain release factor subunit 1
Coloring options: