J4_9AXU_006

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GG*UU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9AXU|1|2|G|1709
9AXU|1|2|G|1710
*
9AXU|1|2|U|1728
9AXU|1|2|U|1729
*
9AXU|1|2|A|1792
9AXU|1|2|G|1793
*
9AXU|1|2|U|1813
9AXU|1|2|C|1814

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein eL19B

Chain g

Large ribosomal subunit protein eL22

Chain s

Large ribosomal subunit protein eL34B

Chain w

Large ribosomal subunit protein eL38A