3D structure

PDB id
9AZN (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human A/P-P/E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.98 Å

Loop

Sequence
CC*GAGUCG*CAAAGCG*UAAG
Length
19 nucleotides
Bulged bases
9AZN|1|L5|C|309
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9AZN_002 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.1139
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_94698.1
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
Number of instances in this motif group
10

Unit IDs

9AZN|1|L5|C|111
9AZN|1|L5|C|112
*
9AZN|1|L5|G|278
9AZN|1|L5|A|279
9AZN|1|L5|G|280
9AZN|1|L5|U|281
9AZN|1|L5|C|282
9AZN|1|L5|G|283
*
9AZN|1|L5|C|304
9AZN|1|L5|A|305
9AZN|1|L5|A|306
9AZN|1|L5|A|307
9AZN|1|L5|G|308
9AZN|1|L5|C|309
9AZN|1|L5|G|310
*
9AZN|1|L5|U|327
9AZN|1|L5|A|328
9AZN|1|L5|A|329
9AZN|1|L5|G|330

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LL
Large ribosomal subunit protein eL13
Chain LN
60S ribosomal protein L15
Chain Lh
60S ribosomal protein L35
Chain Li
60S ribosomal protein L36

Coloring options:


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