J4_9AZN_012
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- AUAG*CAU*AGGGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 9AZN|1|PE|U|8, 9AZN|1|PE|U|47
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9AZN_012 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.3196
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
9AZN|1|PE|A|7
9AZN|1|PE|U|8
9AZN|1|PE|A|9
9AZN|1|PE|G|10
*
9AZN|1|PE|C|25
9AZN|1|PE|A|26
9AZN|1|PE|U|27
*
9AZN|1|PE|A|43
9AZN|1|PE|G|44
9AZN|1|PE|G|45
9AZN|1|PE|G|46
9AZN|1|PE|U|47
9AZN|1|PE|C|48
9AZN|1|PE|C|49
*
9AZN|1|PE|G|65
9AZN|1|PE|U|66
Current chains
- Chain PE
- P/E site tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lo
- 60S ribosomal protein L36a
- Chain S3
- Small subunit ribosomal RNA; SSU rRNA
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