J4_9B00_005

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

9B00|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9B00_005 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.064

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9B00|1|1A|U|1313
9B00|1|1A|C|1314
*
9B00|1|1A|G|1338
9B00|1|1A|G|1339
9B00|1|1A|U|1340
9B00|1|1A|U|1341
9B00|1|1A|A|1342
9B00|1|1A|G|1343
*
9B00|1|1A|C|1404
9B00|1|1A|U|1405
*
9B00|1|1A|A|1597
9B00|1|1A|C|1598
9B00|1|1A|C|1599
9B00|1|1A|C|1600
9B00|1|1A|G|1601
9B00|1|1A|U|1602
9B00|1|1A|A|1603

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23