J4_9B00_012

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9B00_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1089

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

9B00|1|1a|G|142
9B00|1|1a|A|143
9B00|1|1a|G|144
*
9B00|1|1a|C|178
9B00|1|1a|A|179
9B00|1|1a|U|180
9B00|1|1a|G|181
9B00|1|1a|U|182
9B00|1|1a|G|183
*
9B00|1|1a|C|194
9B00|1|1a|A|195
9B00|1|1a|A|196
9B00|1|1a|A|197
9B00|1|1a|G|198
*
9B00|1|1a|C|219
9B00|1|1a|G|220
9B00|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20