J4_9B0S_002

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUAG*CAU*AGGGUCC*GU

Length

16 nucleotides

Bulged bases

9B0S|1|Et|U|8, 9B0S|1|Et|U|47, 9B0S|1|Et|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9B0S_002 not in the Motif Atlas

Homologous match to J4_1IL2_001

Geometric discrepancy: 0.3432

The information below is about J4_1IL2_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

9B0S|1|Et|A|7
9B0S|1|Et|U|8
9B0S|1|Et|A|9
9B0S|1|Et|G|10
*
9B0S|1|Et|C|25
9B0S|1|Et|A|26
9B0S|1|Et|U|27
*
9B0S|1|Et|A|43
9B0S|1|Et|G|44
9B0S|1|Et|G|45
9B0S|1|Et|G|46
9B0S|1|Et|U|47
9B0S|1|Et|C|48
9B0S|1|Et|C|49
*
9B0S|1|Et|G|65
9B0S|1|Et|U|66

Current chains

Chain Et

P/E site tRNA [Homo sapiens]

Nearby chains

Chain Lo

60S ribosomal protein L36a

Chain SF

40S ribosomal protein S5