J4_9B0S_029
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUAG*CAU*AGGGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 9B0S|1|pE|U|8, 9B0S|1|pE|U|47, 9B0S|1|pE|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9B0S_029 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.3388
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
9B0S|1|pE|A|7
9B0S|1|pE|U|8
9B0S|1|pE|A|9
9B0S|1|pE|G|10
*
9B0S|1|pE|C|25
9B0S|1|pE|A|26
9B0S|1|pE|U|27
*
9B0S|1|pE|A|43
9B0S|1|pE|G|44
9B0S|1|pE|G|45
9B0S|1|pE|G|46
9B0S|1|pE|U|47
9B0S|1|pE|C|48
9B0S|1|pE|C|49
*
9B0S|1|pE|G|65
9B0S|1|pE|U|66
Current chains
- Chain pE
- P/E site tRNA [Homo sapiens]
Nearby chains
- Chain l5
- Large subunit ribosomal RNA; LSU rRNA
- Chain lo
- 60S ribosomal protein L36a
- Chain s2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: