3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CC*GAGUCG*CAAAGCG*UAAG
Length
19 nucleotides
Bulged bases
9B11|1|L5|C|309
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9B11_002 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.11
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_94698.1
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
Number of instances in this motif group
10

Unit IDs

9B11|1|L5|C|111
9B11|1|L5|C|112
*
9B11|1|L5|G|278
9B11|1|L5|A|279
9B11|1|L5|G|280
9B11|1|L5|U|281
9B11|1|L5|C|282
9B11|1|L5|G|283
*
9B11|1|L5|C|304
9B11|1|L5|A|305
9B11|1|L5|A|306
9B11|1|L5|A|307
9B11|1|L5|G|308
9B11|1|L5|C|309
9B11|1|L5|G|310
*
9B11|1|L5|U|327
9B11|1|L5|A|328
9B11|1|L5|A|329
9B11|1|L5|G|330

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LL
Large ribosomal subunit protein eL13
Chain LN
60S ribosomal protein L15
Chain Lh
60S ribosomal protein L35
Chain Li
60S ribosomal protein L36

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3159 s