J4_9B24_006
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CGAUUAG*CC*GUAC*GG
- Length
- 15 nucleotides
- Bulged bases
- 9B24|1|Y|G|1386, 9B24|1|Y|U|1389, 9B24|1|Y|A|1390, 9B24|1|Y|U|1864, 9B24|1|Y|A|1865
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9B24_006 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.4758
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9B24|1|Y|C|1385
9B24|1|Y|G|1386
9B24|1|Y|A|1387
9B24|1|Y|U|1388
9B24|1|Y|U|1389
9B24|1|Y|A|1390
9B24|1|Y|G|1391
*
9B24|1|Y|C|1409
9B24|1|Y|C|1410
*
9B24|1|Y|G|1863
9B24|1|Y|U|1864
9B24|1|Y|A|1865
9B24|1|Y|C|1866
*
9B24|1|Y|G|2233
9B24|1|Y|G|2234
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain j
- Large ribosomal subunit protein bL17
- Chain o
- Large ribosomal subunit protein uL22
- Chain x
- Large ribosomal subunit protein bL32
Coloring options: