J4_9B24_007

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

9B24|1|Y|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9B24_007 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.2024

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9B24|1|Y|G|1425
9B24|1|Y|G|1426
9B24|1|Y|U|1427
9B24|1|Y|U|1428
9B24|1|Y|C|1429
*
9B24|1|Y|G|1453
9B24|1|Y|G|1454
9B24|1|Y|U|1455
9B24|1|Y|G|1456
9B24|1|Y|A|1457
9B24|1|Y|G|1458
*
9B24|1|Y|C|1520
9B24|1|Y|C|1521
*
9B24|1|Y|G|1815
9B24|1|Y|C|1816
9B24|1|Y|C|1817
9B24|1|Y|C|1818
9B24|1|Y|G|1819
9B24|1|Y|U|1820
9B24|1|Y|A|1821
9B24|1|Y|C|1822

Current chains

Chain Y

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein uL23

Chain z

Large ribosomal subunit protein bL34