J4_9B24_013
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- AACC*GAC*GGACA*UCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9B24_013 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.1762
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9B24|1|Y|A|2867
9B24|1|Y|A|2868
9B24|1|Y|C|2869
9B24|1|Y|C|2870
*
9B24|1|Y|G|2898
9B24|1|Y|A|2899
9B24|1|Y|C|2900
*
9B24|1|Y|G|2955
9B24|1|Y|G|2956
9B24|1|Y|A|2957
9B24|1|Y|C|2958
9B24|1|Y|A|2959
*
9B24|1|Y|U|2993
9B24|1|Y|C|2994
9B24|1|Y|U|2995
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain a
- Large ribosomal subunit protein uL3
- Chain f
- Large ribosomal subunit protein uL13
- Chain g
- Large ribosomal subunit protein uL14
Coloring options: