J4_9B50_002

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9B50|1|AA|C|183, 9B50|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B50|1|AA|G|142
9B50|1|AA|A|143
9B50|1|AA|G|144
*
9B50|1|AA|C|178
9B50|1|AA|A|179
9B50|1|AA|U|180
9B50|1|AA|A|181
9B50|1|AA|A|182
9B50|1|AA|C|183
9B50|1|AA|G|184
*
9B50|1|AA|C|193
9B50|1|AA|C|194
9B50|1|AA|A|195
9B50|1|AA|A|196
9B50|1|AA|A|197
9B50|1|AA|G|198
*
9B50|1|AA|U|219
9B50|1|AA|G|220
9B50|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20