3D structure

PDB id
9BDN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with angiogenin and tRNAAla
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CC*GAGUCG*CAAAGCG*UAAG
Length
19 nucleotides
Bulged bases
9BDN|1|A28S|C|309
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9BDN_003 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.1289
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

9BDN|1|A28S|C|111
9BDN|1|A28S|C|112
*
9BDN|1|A28S|G|278
9BDN|1|A28S|A|279
9BDN|1|A28S|G|280
9BDN|1|A28S|U|281
9BDN|1|A28S|C|282
9BDN|1|A28S|G|283
*
9BDN|1|A28S|C|304
9BDN|1|A28S|A|305
9BDN|1|A28S|A|306
9BDN|1|A28S|A|307
9BDN|1|A28S|G|308
9BDN|1|A28S|C|309
9BDN|1|A28S|G|310
*
9BDN|1|A28S|U|327
9BDN|1|A28S|A|328
9BDN|1|A28S|A|329
9BDN|1|A28S|G|330

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain AL13
Large ribosomal subunit protein eL13
Chain AL15
60S ribosomal protein L15
Chain AL35
60S ribosomal protein L35
Chain AL36
60S ribosomal protein L36

Coloring options:


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