J4_9BDN_016
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9BDN|1|A18S|A|672, 9BDN|1|A18S|A|1083, 9BDN|1|A18S|C|1085, 9BDN|1|A18S|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BDN_016 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0783
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BDN|1|A18S|A|671
9BDN|1|A18S|A|672
9BDN|1|A18S|G|673
*
9BDN|1|A18S|C|1032
9BDN|1|A18S|G|1033
9BDN|1|A18S|A|1034
9BDN|1|A18S|A|1035
9BDN|1|A18S|A|1036
9BDN|1|A18S|G|1037
*
9BDN|1|A18S|C|1078
9BDN|1|A18S|C|1079
9BDN|1|A18S|A|1080
9BDN|1|A18S|U|1081
9BDN|1|A18S|A|1082
9BDN|1|A18S|A|1083
9BDN|1|A18S|A|1084
9BDN|1|A18S|C|1085
9BDN|1|A18S|G|1086
9BDN|1|A18S|A|1087
9BDN|1|A18S|U|1088
9BDN|1|A18S|G|1089
*
9BDN|1|A18S|U|1160
9BDN|1|A18S|U|1161
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL41
- eL41
- Chain AL43
- 60S ribosomal protein L37a
- Chain AS11
- 40S ribosomal protein S11
- Chain AS13
- 40S ribosomal protein S13
- Chain AS14
- Small ribosomal subunit protein uS11
- Chain AS22
- 40S ribosomal protein S15a
- Chain AS23
- 40S ribosomal protein S23
- Chain AS26
- eS26
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