J4_9BDP_003
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 9BDP|1|A28S|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BDP_003 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1634
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
9BDP|1|A28S|C|111
9BDP|1|A28S|C|112
*
9BDP|1|A28S|G|278
9BDP|1|A28S|A|279
9BDP|1|A28S|G|280
9BDP|1|A28S|U|281
9BDP|1|A28S|C|282
9BDP|1|A28S|G|283
*
9BDP|1|A28S|C|304
9BDP|1|A28S|A|305
9BDP|1|A28S|A|306
9BDP|1|A28S|A|307
9BDP|1|A28S|G|308
9BDP|1|A28S|C|309
9BDP|1|A28S|G|310
*
9BDP|1|A28S|U|327
9BDP|1|A28S|A|328
9BDP|1|A28S|A|329
9BDP|1|A28S|G|330
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL13
- Large ribosomal subunit protein eL13
- Chain AL15
- 60S ribosomal protein L15
- Chain AL35
- 60S ribosomal protein L35
- Chain AL36
- 60S ribosomal protein L36
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