J4_9BH5_001
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CC*GAGUCG*UAAAGUG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 9BH5|1|A5|U|304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BH5_001 not in the Motif Atlas
- Homologous match to J4_8C3A_001
- Geometric discrepancy: 0.0983
- The information below is about J4_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BH5|1|A5|C|111
9BH5|1|A5|C|112
*
9BH5|1|A5|G|273
9BH5|1|A5|A|274
9BH5|1|A5|G|275
9BH5|1|A5|U|276
9BH5|1|A5|C|277
9BH5|1|A5|G|278
*
9BH5|1|A5|U|299
9BH5|1|A5|A|300
9BH5|1|A5|A|301
9BH5|1|A5|A|302
9BH5|1|A5|G|303
9BH5|1|A5|U|304
9BH5|1|A5|G|305
*
9BH5|1|A5|U|322
9BH5|1|A5|A|323
9BH5|1|A5|A|324
9BH5|1|A5|G|325
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CL
- Large ribosomal subunit protein eL13
- Chain CN
- Large ribosomal subunit protein eL15
- Chain Ch
- Large ribosomal subunit protein uL29
- Chain Ci
- Large ribosomal subunit protein eL36
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