J4_9BH5_003

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAAAUAU*AG*CGAU*AG

Length

15 nucleotides

Bulged bases

9BH5|1|A5|A|1517, 9BH5|1|A5|U|1520

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9BH5_003 not in the Motif Atlas

Homologous match to J4_8C3A_003

Geometric discrepancy: 0.1442

The information below is about J4_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BH5|1|A5|C|1516
9BH5|1|A5|A|1517
9BH5|1|A5|A|1518
9BH5|1|A5|A|1519
9BH5|1|A5|U|1520
9BH5|1|A5|A|1521
9BH5|1|A5|U|1522
*
9BH5|1|A5|A|1540
9BH5|1|A5|G|1541
*
9BH5|1|A5|C|1970
9BH5|1|A5|G|1971
9BH5|1|A5|A|1972
9BH5|1|A5|U|1973
*
9BH5|1|A5|A|2455
9BH5|1|A5|G|2456

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CP

Large ribosomal subunit protein uL22

Chain CR

Large ribosomal subunit protein eL19

Chain Cd

Large ribosomal subunit protein eL31