J4_9BH5_004
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GGUUC*GGUCAG*CU*AAUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9BH5|1|A5|C|1588
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BH5_004 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0599
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BH5|1|A5|G|1557
9BH5|1|A5|G|1558
9BH5|1|A5|U|1559
9BH5|1|A5|U|1560
9BH5|1|A5|C|1561
*
9BH5|1|A5|G|1585
9BH5|1|A5|G|1586
9BH5|1|A5|U|1587
9BH5|1|A5|C|1588
9BH5|1|A5|A|1589
9BH5|1|A5|G|1590
*
9BH5|1|A5|C|1690
9BH5|1|A5|U|1691
*
9BH5|1|A5|A|1922
9BH5|1|A5|A|1923
9BH5|1|A5|U|1924
9BH5|1|A5|C|1925
9BH5|1|A5|G|1926
9BH5|1|A5|U|1927
9BH5|1|A5|A|1928
9BH5|1|A5|C|1929
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CR
- Large ribosomal subunit protein eL19
- Chain CX
- Large ribosomal subunit protein uL23B
- Chain Cg
- Large ribosomal subunit protein eL34
- Chain Cj
- Ribosomal protein L37
- Chain Ck
- Large ribosomal subunit protein eL38
- Chain Cl
- Large ribosomal subunit protein eL39
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