J4_9BH5_005
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GC*GU*AG*UC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BH5_005 not in the Motif Atlas
- Homologous match to J4_8C3A_005
- Geometric discrepancy: 0.1234
- The information below is about J4_8C3A_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BH5|1|A5|G|1767
9BH5|1|A5|C|1768
*
9BH5|1|A5|G|1786
9BH5|1|A5|U|1787
*
9BH5|1|A5|A|1845
9BH5|1|A5|G|1846
*
9BH5|1|A5|U|1866
9BH5|1|A5|C|1867
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CR
- Large ribosomal subunit protein eL19
- Chain CU
- Large ribosomal subunit protein eL22
- Chain Cg
- Large ribosomal subunit protein eL34
- Chain Ck
- Large ribosomal subunit protein eL38
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