J4_9BH5_006
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GACUG*CAGAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BH5_006 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.0641
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BH5|1|A5|G|2234
9BH5|1|A5|A|2235
9BH5|1|A5|C|2236
9BH5|1|A5|U|2237
9BH5|1|A5|G|2238
*
9BH5|1|A5|C|2250
9BH5|1|A5|A|2251
9BH5|1|A5|G|2252
9BH5|1|A5|A|2253
9BH5|1|A5|G|2254
*
9BH5|1|A5|U|2289
9BH5|1|A5|G|2290
9BH5|1|A5|A|2291
9BH5|1|A5|U|2292
9BH5|1|A5|U|2293
*
9BH5|1|A5|A|2420
9BH5|1|A5|U|2421
9BH5|1|A5|U|2422
9BH5|1|A5|A|2423
9BH5|1|A5|A|2424
9BH5|1|A5|C|2425
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain CA
- Large ribosomal subunit protein uL2
- Chain Cn
- eL41
- Chain Cp
- Large ribosomal subunit protein eL43
Coloring options: