J4_9BH5_013

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AUAG*CGU*AAGGUCA*UU

Length

16 nucleotides

Bulged bases

9BH5|1|DA|U|8, 9BH5|1|DA|U|47, 9BH5|1|DA|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9BH5_013 not in the Motif Atlas

Homologous match to J4_1IL2_001

Geometric discrepancy: 0.2231

The information below is about J4_1IL2_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

49

Unit IDs

9BH5|1|DA|A|7
9BH5|1|DA|U|8
9BH5|1|DA|A|9
9BH5|1|DA|G|10
*
9BH5|1|DA|C|25
9BH5|1|DA|G|26
9BH5|1|DA|U|27
*
9BH5|1|DA|A|43
9BH5|1|DA|A|44
9BH5|1|DA|G|45
9BH5|1|DA|G|46
9BH5|1|DA|U|47
9BH5|1|DA|C|48
9BH5|1|DA|A|49
*
9BH5|1|DA|U|65
9BH5|1|DA|U|66

Current chains

Chain DA

tRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain AS

Small ribosomal subunit protein uS13

Chain CI

Large ribosomal subunit protein uL16