J4_9BKD_001
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- C(A2M)UUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 9BKD|1|A|G|407
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BKD_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.0927
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BKD|1|A|C|98
9BKD|1|A|A2M|99
9BKD|1|A|U|100
9BKD|1|A|U|101
9BKD|1|A|A|102
9BKD|1|A|A|103
9BKD|1|A|A|104
9BKD|1|A|U|105
9BKD|1|A|C|106
*
9BKD|1|A|G|355
9BKD|1|A|C|356
9BKD|1|A|C|357
*
9BKD|1|A|G|405
9BKD|1|A|U|406
9BKD|1|A|G|407
9BKD|1|A|A|408
9BKD|1|A|C|409
*
9BKD|1|A|G|431
9BKD|1|A|G|432
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS17
- Chain C
- Small ribosomal subunit protein eS4, X isoform
- Chain E
- Small ribosomal subunit protein uS12
- Chain R
- Small ribosomal subunit protein eS8
Coloring options: