J4_9BKD_002
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9BKD|1|A|A|672, 9BKD|1|A|A|1083, 9BKD|1|A|C|1085, 9BKD|1|A|A|1087
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BKD_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.064
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BKD|1|A|A|671
9BKD|1|A|A|672
9BKD|1|A|G|673
*
9BKD|1|A|C|1032
9BKD|1|A|G|1033
9BKD|1|A|A|1034
9BKD|1|A|A|1035
9BKD|1|A|A|1036
9BKD|1|A|G|1037
*
9BKD|1|A|C|1078
9BKD|1|A|C|1079
9BKD|1|A|A|1080
9BKD|1|A|PSU|1081
9BKD|1|A|A|1082
9BKD|1|A|A|1083
9BKD|1|A|A|1084
9BKD|1|A|C|1085
9BKD|1|A|G|1086
9BKD|1|A|A|1087
9BKD|1|A|U|1088
9BKD|1|A|G|1089
*
9BKD|1|A|U|1160
9BKD|1|A|U|1161
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 9
- 60S ribosomal protein L41
- Chain B
- Small ribosomal subunit protein uS17
- Chain E
- Small ribosomal subunit protein uS12
- Chain I
- 40S ribosomal protein S13
- Chain J
- 40S ribosomal protein S15a
- Chain P
- 40S ribosomal protein S14
- Chain Q
- 40S ribosomal protein S26
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