J4_9BUP_001
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UC*GAGUCG*CUAAUACG*UAAA
- Length
- 20 nucleotides
- Bulged bases
- 9BUP|1|AA|C|306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BUP_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1519
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
9BUP|1|AA|U|112
9BUP|1|AA|C|113
*
9BUP|1|AA|G|274
9BUP|1|AA|A|275
9BUP|1|AA|G|276
9BUP|1|AA|U|277
9BUP|1|AA|C|278
9BUP|1|AA|G|279
*
9BUP|1|AA|C|300
9BUP|1|AA|U|301
9BUP|1|AA|A|302
9BUP|1|AA|A|303
9BUP|1|AA|U|304
9BUP|1|AA|A|305
9BUP|1|AA|C|306
9BUP|1|AA|G|307
*
9BUP|1|AA|U|324
9BUP|1|AA|A|325
9BUP|1|AA|A|326
9BUP|1|AA|A|327
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 60S ribosomal protein L35
- Chain AL
- 60S ribosomal protein L13
- Chain AP
- Ribosomal protein L15
- Chain Ab
- 60S ribosomal protein L36
Coloring options: