J4_9BUP_004
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUUU*AGUUAG*CC*GAGCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9BUP|1|AA|U|1672
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BUP_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.091
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|AA|G|1641
9BUP|1|AA|G|1642
9BUP|1|AA|U|1643
9BUP|1|AA|U|1644
9BUP|1|AA|U|1645
*
9BUP|1|AA|A|1669
9BUP|1|AA|G|1670
9BUP|1|AA|U|1671
9BUP|1|AA|U|1672
9BUP|1|AA|A|1673
9BUP|1|AA|G|1674
*
9BUP|1|AA|C|1757
9BUP|1|AA|C|1758
*
9BUP|1|AA|G|2096
9BUP|1|AA|A|2097
9BUP|1|AA|G|2098
9BUP|1|AA|C|2099
9BUP|1|AA|G|2100
9BUP|1|AA|U|2101
9BUP|1|AA|A|2102
9BUP|1|AA|C|2103
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 60S ribosomal protein L35
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AT
- 60S ribosomal protein L19
- Chain AY
- 60S ribosomal protein L23
- Chain Aa
- 60S ribosomal protein L34
- Chain Ac
- Ribosomal protein L37
- Chain Ad
- 60S ribosomal protein L38
- Chain Ae
- 60S ribosomal protein L39
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