J4_9BUP_006
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BUP_006 not in the Motif Atlas
- Homologous match to J4_8CRE_006
- Geometric discrepancy: 0.0521
- The information below is about J4_8CRE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BUP|1|AA|G|2423
9BUP|1|AA|A|2424
9BUP|1|AA|C|2425
9BUP|1|AA|U|2426
9BUP|1|AA|G|2427
*
9BUP|1|AA|C|2439
9BUP|1|AA|A|2440
9BUP|1|AA|U|2441
9BUP|1|AA|A|2442
9BUP|1|AA|G|2443
*
9BUP|1|AA|U|2479
9BUP|1|AA|G|2480
9BUP|1|AA|A|2481
9BUP|1|AA|U|2482
9BUP|1|AA|U|2483
*
9BUP|1|AA|A|2610
9BUP|1|AA|U|2611
9BUP|1|AA|U|2612
9BUP|1|AA|A|2613
9BUP|1|AA|A|2614
9BUP|1|AA|C|2615
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L2
- Chain Ag
- 60S ribosomal protein L41
- Chain Ah
- Large ribosomal subunit protein eL43
- Chain SA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: