J4_9BUP_007
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9BUP|1|AA|U|2607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BUP_007 not in the Motif Atlas
- Homologous match to J4_8CRE_007
- Geometric discrepancy: 0.086
- The information below is about J4_8CRE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_63658.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F
- Number of instances in this motif group
- 1
Unit IDs
9BUP|1|AA|C|2485
9BUP|1|AA|U|2486
9BUP|1|AA|G|2487
*
9BUP|1|AA|C|2541
9BUP|1|AA|G|2542
*
9BUP|1|AA|C|2560
9BUP|1|AA|U|2561
9BUP|1|AA|U|2562
9BUP|1|AA|A|2563
9BUP|1|AA|A|2564
9BUP|1|AA|G|2565
9BUP|1|AA|G|2566
9BUP|1|AA|U|2567
9BUP|1|AA|A|2568
9BUP|1|AA|G|2569
*
9BUP|1|AA|U|2603
9BUP|1|AA|G|2604
9BUP|1|AA|A|2605
9BUP|1|AA|A|2606
9BUP|1|AA|U|2607
9BUP|1|AA|G|2608
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L2
- Chain Ag
- 60S ribosomal protein L41
- Chain S8
- Transfer RNA; tRNA
- Chain SA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: