J4_9BUP_008

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAAG*UUGAU*AAC*GUG

Length

16 nucleotides

Bulged bases

9BUP|1|AA|A|2996

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9BUP_008 not in the Motif Atlas

Homologous match to J4_8CRE_008

Geometric discrepancy: 0.0915

The information below is about J4_8CRE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

9BUP|1|AA|C|2993
9BUP|1|AA|A|2994
9BUP|1|AA|A|2995
9BUP|1|AA|A|2996
9BUP|1|AA|G|2997
*
9BUP|1|AA|U|3051
9BUP|1|AA|U|3052
9BUP|1|AA|G|3053
9BUP|1|AA|A|3054
9BUP|1|AA|U|3055
*
9BUP|1|AA|A|3079
9BUP|1|AA|A|3080
9BUP|1|AA|C|3081
*
9BUP|1|AA|G|3090
9BUP|1|AA|U|3091
9BUP|1|AA|G|3092

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein L29

Chain AV

60S ribosomal protein L21

Chain Ai

Large ribosomal subunit protein eL42