J4_9C3H_004

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

9C3H|1|L5|A|2366, 9C3H|1|L5|U|2369, 9C3H|1|L5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C3H|1|L5|OMC|2365
9C3H|1|L5|A|2366
9C3H|1|L5|A|2367
9C3H|1|L5|A|2368
9C3H|1|L5|U|2369
9C3H|1|L5|A|2370
9C3H|1|L5|U|2371
*
9C3H|1|L5|A|2389
9C3H|1|L5|G|2390
9C3H|1|L5|G|2391
*
9C3H|1|L5|OMC|2824
9C3H|1|L5|A|2825
9C3H|1|L5|U|2826
9C3H|1|L5|G|2827
9C3H|1|L5|U|2828
9C3H|1|L5|U|2829
*
9C3H|1|L5|A|3856
9C3H|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain Ld

Large ribosomal subunit protein eL31

Chain Lh

Large ribosomal subunit protein uL22