J4_9C3H_014
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9C3H|1|S2|A|672, 9C3H|1|S2|A|1083, 9C3H|1|S2|C|1085, 9C3H|1|S2|A|1087
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9C3H_014 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0671
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9C3H|1|S2|A|671
9C3H|1|S2|A|672
9C3H|1|S2|G|673
*
9C3H|1|S2|C|1032
9C3H|1|S2|G|1033
9C3H|1|S2|A|1034
9C3H|1|S2|A|1035
9C3H|1|S2|A|1036
9C3H|1|S2|G|1037
*
9C3H|1|S2|C|1078
9C3H|1|S2|C|1079
9C3H|1|S2|A|1080
9C3H|1|S2|PSU|1081
9C3H|1|S2|A|1082
9C3H|1|S2|A|1083
9C3H|1|S2|A|1084
9C3H|1|S2|C|1085
9C3H|1|S2|G|1086
9C3H|1|S2|A|1087
9C3H|1|S2|U|1088
9C3H|1|S2|G|1089
*
9C3H|1|S2|U|1160
9C3H|1|S2|U|1161
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lp
- Large ribosomal subunit protein eL43
- Chain SL
- Small ribosomal subunit protein uS17
- Chain SN
- Small ribosomal subunit protein uS15
- Chain SO
- Small ribosomal subunit protein uS11
- Chain SW
- Small ribosomal subunit protein uS8
- Chain SX
- Small ribosomal subunit protein uS12
- Chain Sa
- Small ribosomal subunit protein eS26
- Chain So
- Small ribosomal subunit protein eS32
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