J4_9C8K_002
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9C8K|1|1|A|672, 9C8K|1|1|A|1083
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9C8K_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.157
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
9C8K|1|1|A|671
9C8K|1|1|A|672
9C8K|1|1|G|673
*
9C8K|1|1|C|1032
9C8K|1|1|G|1033
9C8K|1|1|A|1034
9C8K|1|1|A|1035
9C8K|1|1|A|1036
9C8K|1|1|G|1037
*
9C8K|1|1|C|1078
9C8K|1|1|C|1079
9C8K|1|1|A|1080
9C8K|1|1|U|1081
9C8K|1|1|A|1082
9C8K|1|1|A|1083
9C8K|1|1|A|1084
9C8K|1|1|C|1085
9C8K|1|1|G|1086
9C8K|1|1|A|1087
9C8K|1|1|U|1088
9C8K|1|1|G|1089
*
9C8K|1|1|U|1160
9C8K|1|1|U|1161
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain L
- uS17
- Chain N
- uS15
- Chain W
- uS8
- Chain X
- uS12
- Chain a
- 40S ribosomal protein S26
Coloring options: