J4_9D0J_009
3D structure
- PDB id
- 9D0J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 9D0J|1|1A|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9D0J_009 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.054
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9D0J|1|1A|C|2285
9D0J|1|1A|A|2286
9D0J|1|1A|A|2287
9D0J|1|1A|A|2288
9D0J|1|1A|G|2289
*
9D0J|1|1A|C|2343
9D0J|1|1A|U|2344
9D0J|1|1A|G|2345
9D0J|1|1A|A|2346
9D0J|1|1A|C|2347
*
9D0J|1|1A|G|2370
9D0J|1|1A|G|2371
9D0J|1|1A|G|2372
*
9D0J|1|1A|C|2381
9D0J|1|1A|G|2382
9D0J|1|1A|G|2383
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1S
- 50S ribosomal protein L18
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