J4_9D89_004

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9D89|1|D|G|1273, 9D89|1|D|A|1274, 9D89|1|D|U|1275, 9D89|1|D|U|1649

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9D89_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0547

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9D89|1|D|C|1272
9D89|1|D|G|1273
9D89|1|D|A|1274
9D89|1|D|U|1275
9D89|1|D|A|1276
9D89|1|D|A|1277
9D89|1|D|A|1278
*
9D89|1|D|U|1296
9D89|1|D|C|1297
*
9D89|1|D|G|1647
9D89|1|D|C|1648
9D89|1|D|U|1649
9D89|1|D|U|1650
*
9D89|1|D|A|2013
9D89|1|D|G|2014

Current chains

Chain D

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L17

Chain M

50S ribosomal protein L32

Chain r

50S ribosomal protein L22