J4_9D89_006
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9D89|1|D|G|1343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9D89_006 not in the Motif Atlas
- Homologous match to J4_5J7L_023
- Geometric discrepancy: 0.0375
- The information below is about J4_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9D89|1|D|U|1315
9D89|1|D|C|1316
*
9D89|1|D|G|1340
9D89|1|D|G|1341
9D89|1|D|U|1342
9D89|1|D|G|1343
9D89|1|D|A|1344
9D89|1|D|G|1345
*
9D89|1|D|C|1406
9D89|1|D|U|1407
*
9D89|1|D|A|1599
9D89|1|D|A|1600
9D89|1|D|U|1601
9D89|1|D|C|1602
9D89|1|D|G|1603
9D89|1|D|U|1604
9D89|1|D|A|1605
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain K
- Large ribosomal subunit protein uL23
Coloring options: