J4_9D89_007

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GG*UU*AC*GC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9D89_007 not in the Motif Atlas

Homologous match to J4_5J7L_024

Geometric discrepancy: 0.0491

The information below is about J4_5J7L_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9D89|1|D|G|1446
9D89|1|D|G|1447
*
9D89|1|D|U|1468
9D89|1|D|U|1469
*
9D89|1|D|A|1527
9D89|1|D|C|1528
*
9D89|1|D|G|1548
9D89|1|D|C|1549

Current chains

Chain D

23S rRNA

Nearby chains