3D structure

PDB id
9D89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
GGGC*GAC*GGAAG*UGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9D89_011 not in the Motif Atlas
Homologous match to J4_5J7L_028
Geometric discrepancy: 0.0549
The information below is about J4_5J7L_028
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

9D89|1|D|G|2647
9D89|1|D|G|2648
9D89|1|D|G|2649
9D89|1|D|C|2650
*
9D89|1|D|G|2678
9D89|1|D|A|2679
9D89|1|D|C|2680
*
9D89|1|D|G|2735
9D89|1|D|G|2736
9D89|1|D|A|2737
9D89|1|D|A|2738
9D89|1|D|G|2739
*
9D89|1|D|U|2773
9D89|1|D|G|2774
9D89|1|D|C|2775

Current chains

Chain D
23S rRNA

Nearby chains

Chain G
50S ribosomal protein L3
Chain i
Large ribosomal subunit protein uL13
Chain j
50S ribosomal protein L14

Coloring options:


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