J4_9DFC_028

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

9DFC|1|2a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9DFC_028 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1041

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

9DFC|1|2a|G|142
9DFC|1|2a|A|143
9DFC|1|2a|G|144
*
9DFC|1|2a|C|178
9DFC|1|2a|A|179
9DFC|1|2a|U|180
9DFC|1|2a|G|181
9DFC|1|2a|U|182
9DFC|1|2a|G|183
*
9DFC|1|2a|C|194
9DFC|1|2a|A|195
9DFC|1|2a|A|196
9DFC|1|2a|A|197
9DFC|1|2a|G|198
*
9DFC|1|2a|C|219
9DFC|1|2a|G|220
9DFC|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20