J4_9DFD_025
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 9DFD|1|2A|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9DFD_025 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.0977
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9DFD|1|2A|C|2285
9DFD|1|2A|A|2286
9DFD|1|2A|A|2287
9DFD|1|2A|A|2288
9DFD|1|2A|G|2289
*
9DFD|1|2A|C|2343
9DFD|1|2A|U|2344
9DFD|1|2A|G|2345
9DFD|1|2A|A|2346
9DFD|1|2A|C|2347
*
9DFD|1|2A|G|2370
9DFD|1|2A|G|2371
9DFD|1|2A|G|2372
*
9DFD|1|2A|C|2381
9DFD|1|2A|G|2382
9DFD|1|2A|G|2383
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 26
- 50S ribosomal protein L33
- Chain 28
- 50S ribosomal protein L35
- Chain 2S
- 50S ribosomal protein L18
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