J4_9DFE_024

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

9DFE|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9DFE_024 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0779

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9DFE|1|2a|G|115
9DFE|1|2a|A|116
9DFE|1|2a|G|117
9DFE|1|2a|U|118
9DFE|1|2a|A|119
9DFE|1|2a|A|120
9DFE|1|2a|C|121
9DFE|1|2a|G|122
*
9DFE|1|2a|U|239
9DFE|1|2a|C|240
*
9DFE|1|2a|G|286
9DFE|1|2a|U|287
9DFE|1|2a|A|288
9DFE|1|2a|G|289
*
9DFE|1|2a|C|311
9DFE|1|2a|C|312

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17