J4_9DOV_011
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9DOV|1|B5|A|623, 9DOV|1|B5|A|1026, 9DOV|1|B5|C|1028, 9DOV|1|B5|U|1029, 9DOV|1|B5|A|1030, 9DOV|1|B5|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DOV|1|B5|A|622
9DOV|1|B5|A|623
9DOV|1|B5|G|624
*
9DOV|1|B5|C|975
9DOV|1|B5|G|976
9DOV|1|B5|A|977
9DOV|1|B5|A|978
9DOV|1|B5|A|979
9DOV|1|B5|G|980
*
9DOV|1|B5|C|1021
9DOV|1|B5|C|1022
9DOV|1|B5|A|1023
9DOV|1|B5|U|1024
9DOV|1|B5|A|1025
9DOV|1|B5|A|1026
9DOV|1|B5|A|1027
9DOV|1|B5|C|1028
9DOV|1|B5|U|1029
9DOV|1|B5|A|1030
9DOV|1|B5|U|1031
9DOV|1|B5|G|1032
*
9DOV|1|B5|U|1103
9DOV|1|B5|U|1104
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BO
- 40S ribosomal protein S14-A
- Chain BW
- Small ribosomal subunit protein uS8A
- Chain BX
- 40S ribosomal protein S23-A
- Chain Ba
- Small ribosomal subunit protein eS26B
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