J4_9DP7_002

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|C|185
9DP7|1|A1|U|186
9DP7|1|A1|A|187
9DP7|1|A1|U|188
9DP7|1|A1|G|189
*
9DP7|1|A1|C|205
9DP7|1|A1|G|206
9DP7|1|A1|U|207
9DP7|1|A1|C|208
*
9DP7|1|A1|G|212
9DP7|1|A1|A|213
9DP7|1|A1|G|214
*
9DP7|1|A1|C|226
9DP7|1|A1|G|227
9DP7|1|A1|U|228
9DP7|1|A1|G|229
9DP7|1|A1|U|230
9DP7|1|A1|G|231

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

Large ribosomal subunit protein uL4A

Chain AY

60S ribosomal protein L26-A