J4_9E16_003
3D structure
- PDB id
- 9E16 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGACAAG*CC*GUAC*GG
- Length
- 15 nucleotides
- Bulged bases
- 9E16|1|I|G|1402, 9E16|1|I|A|1403, 9E16|1|I|C|1404, 9E16|1|I|A|1405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9E16_003 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.4056
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_19484.1
- Basepair signature
- cWW-F-cWW-F-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9E16|1|I|C|1401
9E16|1|I|G|1402
9E16|1|I|A|1403
9E16|1|I|C|1404
9E16|1|I|A|1405
9E16|1|I|A|1406
9E16|1|I|G|1407
*
9E16|1|I|C|1425
9E16|1|I|C|1426
*
9E16|1|I|G|1880
9E16|1|I|U|1881
9E16|1|I|A|1882
9E16|1|I|C|1883
*
9E16|1|I|G|2247
9E16|1|I|G|2248
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
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