J4_9E1S_002
3D structure
- PDB id
- 9E1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- GGAAG*UGCC*GAC*GGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9E1S_002 not in the Motif Atlas
- Homologous match to J4_7A0S_002
- Geometric discrepancy: 0.1463
- The information below is about J4_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9E1S|1|I|G|379
9E1S|1|I|G|380
9E1S|1|I|A|381
9E1S|1|I|A|382
9E1S|1|I|G|383
*
9E1S|1|I|U|399
9E1S|1|I|G|400
9E1S|1|I|C|401
9E1S|1|I|C|402
*
9E1S|1|I|G|406
9E1S|1|I|A|407
9E1S|1|I|C|408
*
9E1S|1|I|G|420
9E1S|1|I|G|421
9E1S|1|I|U|422
9E1S|1|I|A|423
9E1S|1|I|C|424
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain U
- 50S ribosomal protein uL24
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