J4_9E6Q_001

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CC*GAGUAC*GGAACGCG*CAAG

Length

20 nucleotides

Bulged bases

9E6Q|1|1|C|436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9E6Q_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.1406

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9E6Q|1|1|C|249
9E6Q|1|1|C|250
*
9E6Q|1|1|G|404
9E6Q|1|1|A|405
9E6Q|1|1|G|406
9E6Q|1|1|U|407
9E6Q|1|1|A|408
9E6Q|1|1|C|409
*
9E6Q|1|1|G|430
9E6Q|1|1|G|431
9E6Q|1|1|A|432
9E6Q|1|1|A|433
9E6Q|1|1|C|434
9E6Q|1|1|G|435
9E6Q|1|1|C|436
9E6Q|1|1|G|437
*
9E6Q|1|1|C|453
9E6Q|1|1|A|454
9E6Q|1|1|A|455
9E6Q|1|1|G|456

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AH

Large ribosomal subunit protein eL13

Chain AM

50S ribosomal protein L15e