J4_9E6Q_003

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CAGCGAAG*CC*GGCUC*GG

Length

17 nucleotides

Bulged bases

9E6Q|1|1|G|1401, 9E6Q|1|1|A|1402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75426.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9E6Q|1|1|C|1397
9E6Q|1|1|A|1398
9E6Q|1|1|G|1399
9E6Q|1|1|C|1400
9E6Q|1|1|G|1401
9E6Q|1|1|A|1402
9E6Q|1|1|A|1403
9E6Q|1|1|G|1404
*
9E6Q|1|1|C|1422
9E6Q|1|1|C|1423
*
9E6Q|1|1|G|1788
9E6Q|1|1|G|1789
9E6Q|1|1|C|1790
9E6Q|1|1|U|1791
9E6Q|1|1|C|1792
*
9E6Q|1|1|G|2130
9E6Q|1|1|G|2131

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AQ

Large ribosomal subunit protein eL19

Chain AT

Large ribosomal subunit protein uL22

Chain Aa

Large ribosomal subunit protein eL31