J4_9E6Q_007
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GAC(PSU)G*CAUAG*UGAAU*AUCAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9E6Q_007 not in the Motif Atlas
- Homologous match to J4_4V9F_007
- Geometric discrepancy: 0.2039
- The information below is about J4_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9E6Q|1|1|G|1908
9E6Q|1|1|A|1909
9E6Q|1|1|C|1910
9E6Q|1|1|PSU|1911
9E6Q|1|1|G|1912
*
9E6Q|1|1|C|1924
9E6Q|1|1|A|1925
9E6Q|1|1|U|1926
9E6Q|1|1|A|1927
9E6Q|1|1|G|1928
*
9E6Q|1|1|U|1963
9E6Q|1|1|G|1964
9E6Q|1|1|A|1965
9E6Q|1|1|A|1966
9E6Q|1|1|U|1967
*
9E6Q|1|1|A|2095
9E6Q|1|1|U|2096
9E6Q|1|1|C|2097
9E6Q|1|1|A|2098
9E6Q|1|1|A|2099
9E6Q|1|1|C|2100
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AA
- Large ribosomal subunit protein uL2
- Chain Ai
- Large ribosomal subunit protein eL43
Coloring options: